Environment variables¶
You want to write re-usable code, but want to allow the person running the code to customise behaviour without having to change the code itself.
A common way of achieving this is through environment variables. Unfortunately, understanding exactly when you have access to a particular variable in a Linux context can be confusing.
Note
In general, for code that will run only on Faculty, we suggest abstracting behaviour like this into a file in the workspace, rather than through environment variables (for instance, read how to do this for database credentials).
If your code needs to run both in Faculty and in other environments, environment variables are a good choice.
Environment variables in the current shell¶
If you want to have an environment available in the current terminal session, enter the following command in that terminal:
export MY_ENVIRONMENT_VARIABLE=my_value
You can now check that that environment variable is available:
echo $MY_ENVIRONMENT_VARIABLE
All scripts that you start from this terminal session will have access
to $MY_ENVIRONMENT_VARIABLE
. However, any other terminal sessions
will not be able to use it.
Setting environment variables for a server¶
You may want to set an environment variable for a server so that it is
available everywhere in that server. For this, create a terminal in
that server and open /etc/faculty_environment.d/{app}.sh
,
replacing {app}
with any name that makes sense to you. For instance
to open the file with the text editor nano, run:
nano /etc/faculty_environment.d/app.sh
The file name must end in .sh
. In that file, write the
following:
export MY_ENVIRONMENT_VARIABLE=my_value
Any file in /etc/faculty_environment.d
that ends in .sh
gets sourced
(executed in the current shell, rather than in a sub-shell) when you
open a new terminal or when the Jupyter or API or app process
starts. You can therefore use this to give all programs in your server
access to the same set of environment variables.
Any shell or program that is already running will need to be restarted. In particular, to have the environment variables available in Jupyter or JupyterLab, you will need to restart Jupyter:
sudo sv restart jupyter
You will then need to restart the kernel by clicking on Kernel > Restart in the Jupyter or JupyterLab menu.
Setting environment variables for R and RStudio¶
R and RStudio read environment variables in
/project/.Renviron
. Add your variables there by adding a line
like:
MY_ENVIRONMENT_VARIABLE=my_value
This variable will only be available in new R sessions. You can restart the R session through the RStudio user interface: choose Session in the RStudio menu, then Restart R.
Setting environment variables through Faculty environments¶
To set an environment variable as part of a custom environment, write the following in the scripts section of the environment:
echo "export MY_ENVIRONMENT_VARIABLE=my_value" > /etc/faculty_environment.d/app.sh
# Optionally force a restart of the app running on that server:
sudo sv restart jupyter